Introduction Genomic epidemiology combines classical epidemiological methods with genome sequence data to track and monitor both endemic pathogens and the emergence and spread … From beast.community
LogCombiner allows you to combine log and tree files from multiple independent runs of BEAST. It can be run with a user-interface or as a command-line utility. From beast.community
FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures. From beast.community
ESTIMATING RATES AND DATES FROM TIME-STAMPED SEQUENCES
To inform BEAUti/BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option. By default all the taxa are assumed to have a date of zero … From beast.community
Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package. It … From beast.community
PHYLOGEOGRAPHIC DIFFUSION IN DISCRETE SPACE | BEAST DOCUMENTATION
Running BEAUti Running BEAST Analyzing the BEAST output using Tracer Summarizing and visualizing the trees Visualizing MCC trees and calculating Bayes factor support for rates … From beast.community
Downloading and installing BEAST on UNIX/Linux BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees. From beast.community
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or … From beast.community
Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download … From beast.community
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or … From beast.community
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