Introduction Genomic epidemiology combines classical epidemiological methods with genome sequence data to track and monitor both endemic pathogens and the emergence and spread of novel pathogens. In this tutorial, we will follow an outbreak through different phases and use phylogenetic methods to answer questions pertinent to understanding and controlling the … From bing.com
BEAUti & The BEAST and other programs Software packages in the BEAST family. Programs distributed as part of the core BEAST package These programs are distributed independently but are important part of the BEAST toolkit. These programs that will be useful for specific types of data and analysis. From bing.com
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. … From bing.com
The BEAUti & The BEAST software packageBayesian Evolutionary Analysis Utility (BEAUti) BEAUti is a graphical user-interface (GUI) application for generating BEAST XML files. It is distributed in the same package as BEAST. To download it, go to the BEAST download page. From bing.com
Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download and install BEAST following these instructions. From bing.com
Downloading and installing BEAST on UNIX/Linux BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees. From bing.com
FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures. From bing.com
Installing BEAST BEAST has been developed in Java, which allows the same code to run on any platform that has the Java software installed. We have also created packages for each of the common operating systems to provide a user-interface that is ‘native’ and familiar. Latest Version From bing.com
What is BEAST? BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. From bing.com
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